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27822518	Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys.	Walters W	Knight R	mSystems	2016 Jan-Feb	10.1128/mSystems.00009-15	1547	2025/7/29		
16109880	Genome streamlining in a cosmopolitan oceanic bacterium.	Giovannoni SJ	Mathur EJ	"Science (New York, N.Y.)"	2005 Aug 19	10.1126/science.1114057	1097	2025/7/29		
12490947	SAR11 clade dominates ocean surface bacterioplankton communities.	Morris RM	Giovannoni SJ	Nature	2002 Dec 19-26	10.1038/nature01240	1092	2025/7/29		
22448042	The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss.	Morris JJ	Zinser ER	mBio	2012	10.1128/mBio.00036-12	980	2025/7/29		
12167859	Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.	Rappé MS	Giovannoni SJ	Nature	2002 Aug 8	10.1038/nature00917	959	2025/7/29		
12147485	High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.	Connon SA	Giovannoni SJ	Applied and environmental microbiology	2002 Aug	10.1128/AEM.68.8.3878-3885.2002	752	2025/7/29		
10388721	"Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean."	Crump BC	Baross JA	Applied and environmental microbiology	1999 Jul	10.1128/AEM.65.7.3192-3204.1999	706	2025/7/29		
21430787	"Marine bacterial, archaeal and protistan association networks reveal ecological linkages."	Steele JA	Fuhrman JA	The ISME journal	2011 Sep	10.1038/ismej.2011.24	569	2025/7/29		
22170421	"Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage."	Dupont CL	Venter JC	The ISME journal	2012 Jun	10.1038/ismej.2011.189	472	2025/7/29		
11010865	Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom.	González JM	Moran MA	Applied and environmental microbiology	2000 Oct	10.1128/AEM.66.10.4237-4246.2000	453	2025/7/29		
27687974	SAR11 Bacteria: The Most Abundant Plankton in the Oceans.	Giovannoni SJ	Giovannoni SJ	Annual review of marine science	2017 Jan 3	10.1146/annurev-marine-010814-015934	398	2025/7/29		
19659500	The seasonal structure of microbial communities in the Western English Channel.	Gilbert JA	Joint I	Environmental microbiology	2009 Dec	10.1111/j.1462-2920.2009.02017.x	393	2025/7/29		
18253713	"Diversity, ecology, and genomics of the Roseobacter clade: a short overview."	Brinkhoff T	Simon M	Archives of microbiology	2008 Jun	10.1007/s00203-008-0353-y	380	2025/7/29		
9925576	Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA.	Acinas SG	Rodríguez-Valera F	Applied and environmental microbiology	1999 Feb	10.1128/AEM.65.2.514-522.1999	375	2025/7/29		
18337719	SAR11 marine bacteria require exogenous reduced sulphur for growth.	Tripp HJ	Giovannoni SJ	Nature	2008 Apr 10	10.1038/nature06776	360	2025/7/29		
11823184	Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean.	Bano N	Hollibaugh JT	Applied and environmental microbiology	2002 Feb	10.1128/AEM.68.2.505-518.2002	329	2025/7/29		
17068264	Bacterial taxa that limit sulfur flux from the ocean.	Howard EC	Moran MA	"Science (New York, N.Y.)"	2006 Oct 27	10.1126/science.1130657	314	2025/7/29		
16267553	Proteorhodopsin in the ubiquitous marine bacterium SAR11.	Giovannoni SJ	Barofsky DF	Nature	2005 Nov 3	10.1038/nature04032	313	2025/7/29		
18769456	Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.	Sowell SM	Giovanonni SJ	The ISME journal	2009 Jan	10.1038/ismej.2008.83	311	2025/7/29		
23407494	Abundant SAR11 viruses in the ocean.	Zhao Y	Giovannoni SJ	Nature	2013 Feb 21	10.1038/nature11921	309	2025/7/29		
8979340	Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria.	Field KG	Giovannoni SJ	Applied and environmental microbiology	1997 Jan	10.1128/aem.63.1.63-70.1997	298	2025/7/29		
19207571	Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre.	Poretsky RS	Moran MA	Environmental microbiology	2009 Jun	10.1111/j.1462-2920.2008.01863.x	295	2025/7/29		
19444216	Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column.	Shi Y	DeLong EF	Nature	2009 May 14	10.1038/nature08055	291	2025/7/29		
25922985	Bacterial diversity along a 2600_km river continuum.	Savio D	Eiler A	Environmental microbiology	2015 Dec	10.1111/1462-2920.12886	287	2025/7/29		
17483224	A robust species tree for the alphaproteobacteria.	Williams KP	Dickerman AW	Journal of bacteriology	2007 Jul	10.1128/JB.00269-07	281	2025/7/29		
1714704	Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing.	Britschgi TB	Giovannoni SJ	Applied and environmental microbiology	1991 Jun	10.1128/aem.57.6.1707-1713.1991	279	2025/7/29		
14749832	A newly discovered Roseobacter cluster in temperate and polar oceans.	Selje N	Brinkhoff T	Nature	2004 Jan 29	10.1038/nature02272	278	2025/7/29		
11098073	Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems.	Rappé MS	Giovannoni SJ	FEMS microbiology ecology	2000 Sep 1	10.1111/j.1574-6941.2000.tb00744.x	271	2025/7/29		
16104869	Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series.	Brown MV	Fuhrman JA	Environmental microbiology	2005 Sep	10.1111/j.1462-2920.2005.00835.x	268	2025/7/29		
19052630	Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea.	Carlson CA	Vergin K	The ISME journal	2009 Mar	10.1038/ismej.2008.117	267	2025/7/29		
22991429	Streamlining and core genome conservation among highly divergent members of the SAR11 clade.	Grote J	Rappé MS	mBio	2012	10.1128/mBio.00252-12	265	2025/7/29		
23126454	The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics.	Williams TJ	Cavicchioli R	Environmental microbiology	2013 May	10.1111/1462-2920.12017	264	2025/7/29		
20937887	Ecosystem-specific selection pressures revealed through comparative population genomics.	Coleman ML	Chisholm SW	Proceedings of the National Academy of Sciences of the United States of America	2010 Oct 26	10.1073/pnas.1009480107	248	2025/7/29		
21151004	Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean.	Shi Y	DeLong EF	The ISME journal	2011 Jun	10.1038/ismej.2010.189	246	2025/7/29		
17526789	Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system.	Woebken D	Amann R	Applied and environmental microbiology	2007 Jul	10.1128/AEM.02774-06	241	2025/7/29		
19453607	Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean.	Schattenhofer M	Pernthaler J	Environmental microbiology	2009 Aug	10.1111/j.1462-2920.2009.01929.x	238	2025/7/29		
24348267	Expanding the marine virosphere using metagenomics.	Mizuno CM	Ghai R	PLoS genetics	2013	10.1371/journal.pgen.1003987	236	2025/7/29		
28677677	Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans.	Coutinho FH	Thompson FL	Nature communications	2017 Jul 5	10.1038/ncomms15955	234	2025/7/29		
17250750	"Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH."	Alonso-Sáez L	Gasol JM	FEMS microbiology ecology	2007 Apr	10.1111/j.1574-6941.2006.00276.x	231	2025/7/29		
18294206	Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific.	Stevens H	Ulloa O	Environmental microbiology	2008 May	10.1111/j.1462-2920.2007.01539.x	230	2025/7/29		
23096402	Nutrient requirements for growth of the extreme oligotroph 'Candidatus Pelagibacter ubique' HTCC1062 on a defined medium.	Carini P	Giovannoni SJ	The ISME journal	2013 Mar	10.1038/ismej.2012.122	223	2025/7/29		
15240292	Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic ocean.	Malmstrom RR	Kirchman DL	Applied and environmental microbiology	2004 Jul	10.1128/AEM.70.7.4129-4135.2004	222	2025/7/29		
26195108	Growth Rates of Microbes in the Oceans.	Kirchman DL	Kirchman DL	Annual review of marine science	2016	10.1146/annurev-marine-122414-033938	220	2025/7/29		
19930445	Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon.	Poretsky RS	Moran MA	Environmental microbiology	2010 Mar	10.1111/j.1462-2920.2009.02102.x	218	2025/7/29		
22806143	Global biogeography of SAR11 marine bacteria.	Brown MV	Cavicchioli R	Molecular systems biology	2012 Jul 17	10.1038/msb.2012.28	217	2025/7/29		
21573025	Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration.	Steindler L	Giovannoni SJ	PloS one	2011 May 9	10.1371/journal.pone.0019725	215	2025/7/29		
21143328	Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing.	Agogué H	Herndl GJ	Molecular ecology	2011 Jan	10.1111/j.1365-294X.2010.04932.x	214	2025/7/29		
18545967	Bacterial communities in the initial stage of marine biofilm formation on artificial surfaces.	Lee JW	Lee DH	"Journal of microbiology (Seoul, Korea)"	2008 Apr	10.1007/s12275-008-0032-3	211	2025/7/29		
21886845	One carbon metabolism in SAR11 pelagic marine bacteria.	Sun J	Giovannoni SJ	PloS one	2011	10.1371/journal.pone.0023973	203	2025/7/29		
17400772	Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in northwestern Mediterranean coastal waters.	Alonso-Sáez L	Gasol JM	Applied and environmental microbiology	2007 Jun	10.1128/AEM.02627-06	200	2025/7/29		
21915244	Metagenomics of the water column in the pristine upper course of the Amazon river.	Ghai R	Henrique-Silva F	PloS one	2011	10.1371/journal.pone.0023785	200	2025/7/29		
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20010630	Hydrography shapes bacterial biogeography of the deep Arctic Ocean.	Galand PE	Lovejoy C	The ISME journal	2010 Apr	10.1038/ismej.2009.134	195	2025/7/29		
12957910	Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones.	Hahn MW	Hahn MW	Applied and environmental microbiology	2003 Sep	10.1128/AEM.69.9.5248-5254.2003	193	2025/7/29		
26296734	The ocean as a global reservoir of antibiotic resistance genes.	Hatosy SM	Martiny AC	Applied and environmental microbiology	2015 Nov	10.1128/AEM.00736-15	193	2025/7/29		
19201952	Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome.	Biers EJ	Howard EC	Applied and environmental microbiology	2009 Apr	10.1128/AEM.02118-08	186	2025/7/29		
21886640	Bacterial Catabolism of Dimethylsulfoniopropionate (DMSP).	Reisch CR	Whitman WB	Frontiers in microbiology	2011	10.3389/fmicb.2011.00172	186	2025/7/29		
17853909	The importance of culturing bacterioplankton in the 'omics' age.	Giovannoni S	Stingl U	Nature reviews. Microbiology	2007 Oct	10.1038/nrmicro1752	184	2025/7/29		
23345438	Pattern and synchrony of gene expression among sympatric marine microbial populations.	Ottesen EA	DeLong EF	Proceedings of the National Academy of Sciences of the United States of America	2013 Feb 5	10.1073/pnas.1222099110	183	2025/7/29		
23959135	Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria.	Ghai R	Rodriguez-Valera F	Scientific reports	2013	10.1038/srep02471	180	2025/7/29		
24586863	Functional tradeoffs underpin salinity-driven divergence in microbial community composition.	Dupont CL	Bergman B	PloS one	2014	10.1371/journal.pone.0089549	179	2025/7/29		
16872400	Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom.	Morris RM	Giovannoni SJ	Environmental microbiology	2006 Aug	10.1111/j.1462-2920.2006.01029.x	178	2025/7/29		
21412347	Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves' (LD12).	Salcher MM	Posch T	The ISME journal	2011 Aug	10.1038/ismej.2011.8	176	2025/7/29		
25775583	Microbial community transcriptional networks are conserved in three domains at ocean basin scales.	Aylward FO	DeLong EF	Proceedings of the National Academy of Sciences of the United States of America	2015 Apr 28	10.1073/pnas.1502883112	176	2025/7/29		
18043647	Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site.	Stingl U	Giovannoni SJ	The ISME journal	2007 Aug	10.1038/ismej.2007.49	174	2025/7/29		
11422319	Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton.	Suzuki MT	Delong EF	Environmental microbiology	2001 May	10.1046/j.1462-2920.2001.00198.x	172	2025/7/29		
22355532	Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade.	Thrash JC	Giovannoni SJ	Scientific reports	2011	10.1038/srep00013	170	2025/7/29		
15932993	Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean.	Malmstrom RR	Kirchman DL	Applied and environmental microbiology	2005 Jun	10.1128/AEM.71.6.2979-2986.2005	169	2025/7/29		
23466704	High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.	Vergin KL	Giovannoni SJ	The ISME journal	2013 Jul	10.1038/ismej.2013.32	168	2025/7/29		
18557769	Winter-to-summer changes in the composition and single-cell activity of near-surface Arctic prokaryotes.	Alonso-Sáez L	Pedrós-Alio C	Environmental microbiology	2008 Sep	10.1111/j.1462-2920.2008.01674.x	166	2025/7/29		
20192970	Persistence of bacterial and archaeal communities in sea ice through an Arctic winter.	Collins RE	Deming JW	Environmental microbiology	2010 Jul	10.1111/j.1462-2920.2010.02179.x	164	2025/7/29		
10886656	Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I.	García-Martínez J	Rodríguez-Valera F	Molecular ecology	2000 Jul	10.1046/j.1365-294x.2000.00953.x	162	2025/7/29		
22534610	A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters.	Williams TJ	Cavicchioli R	The ISME journal	2012 Oct	10.1038/ismej.2012.28	162	2025/7/29		
21068774	Environmental proteomics of microbial plankton in a highly productive coastal upwelling system.	Sowell SM	Giovannoni SJ	The ISME journal	2011 May	10.1038/ismej.2010.168	161	2025/7/29		
16957198	Effect of natural sunlight on bacterial activity and differential sensitivity of natural bacterioplankton groups in northwestern Mediterranean coastal waters.	Alonso-Sáez L	Sommaruga R	Applied and environmental microbiology	2006 Sep	10.1128/AEM.00597-06	160	2025/7/29		
28398348	"Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters."	Needham DM	Fuhrman JA	The ISME journal	2017 Jul	10.1038/ismej.2017.29	159	2025/7/29		
21833038	Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea.	Parsons RJ	Carlson CA	The ISME journal	2012 Feb	10.1038/ismej.2011.101	158	2025/7/29		
18510552	Abundant and diverse bacteria involved in DMSP degradation in marine surface waters.	Howard EC	Moran MA	Environmental microbiology	2008 Sep	10.1111/j.1462-2920.2008.01665.x	157	2025/7/29		
17014500	Roseobacter and SAR11 dominate microbial glucose uptake in coastal North Sea waters.	Alonso C	Pernthaler J	Environmental microbiology	2006 Nov	10.1111/j.1462-2920.2006.01082.x	156	2025/7/29		
18237307	Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean.	West NJ	Lebaron P	Environmental microbiology	2008 Mar	10.1111/j.1462-2920.2007.01497.x	156	2025/7/29		
22507662	Tracking differential incorporation of dissolved organic carbon types among diverse lineages of Sargasso Sea bacterioplankton.	Nelson CE	Carlson CA	Environmental microbiology	2012 Jun	10.1111/j.1462-2920.2012.02738.x	152	2025/7/29		
23864126	Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight.	Chow CE	Fuhrman JA	The ISME journal	2013 Dec	10.1038/ismej.2013.122	152	2025/7/29		
17293499	The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin.	Stingl U	Giovannoni SJ	Applied and environmental microbiology	2007 Apr	10.1128/AEM.02559-06	151	2025/7/29		
27487207	SAR11 bacteria linked to ocean anoxia and nitrogen loss.	Tsementzi D	Stewart FJ	Nature	2016 Aug 11	10.1038/nature19068	149	2025/7/29		
25609566	An integrated phylogenomic approach toward pinpointing the origin of mitochondria.	Wang Z	Wu M	Scientific reports	2015 Jan 22	10.1038/srep07949	146	2025/7/29		
23902988	Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill.	Rivers AR	Moran MA	The ISME journal	2013 Dec	10.1038/ismej.2013.129	145	2025/7/29		
20668488	Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara.	Quaiser A	López-García P	The ISME journal	2011 Feb	10.1038/ismej.2010.113	144	2025/7/29		
22006322	Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase.	Chen Y	Murrell JC	Proceedings of the National Academy of Sciences of the United States of America	2011 Oct 25	10.1073/pnas.1112928108	143	2025/7/29		
25000228	Methane production by phosphate-starved SAR11 chemoheterotrophic marine bacteria.	Carini P	Giovannoni SJ	Nature communications	2014 Jul 7	10.1038/ncomms5346	142	2025/7/29		
25713564	Phylogenetic shifts of bacterioplankton community composition along the Pearl Estuary: the potential impact of hypoxia and nutrients.	Liu J	Zhang XH	Frontiers in microbiology	2015	10.3389/fmicb.2015.00064	142	2025/7/29		
24825894	A theoretical analysis of how strain-specific viruses can control microbial species diversity.	Thingstad TF	Giske J	Proceedings of the National Academy of Sciences of the United States of America	2014 May 27	10.1073/pnas.1400909111	140	2025/7/29		
23719153	Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin.	Fortunato CS	Crump BC	The ISME journal	2013 Oct	10.1038/ismej.2013.79	138	2025/7/29		
24550299	Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria.	Lidbury I	Chen Y	Proceedings of the National Academy of Sciences of the United States of America	2014 Feb 18	10.1073/pnas.1317834111	138	2025/7/29		
23235289	In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake.	Salcher MM	Pernthaler J	The ISME journal	2013 May	10.1038/ismej.2012.162	137	2025/7/29		
21562561	Novel pathway for assimilation of dimethylsulphoniopropionate widespread in marine bacteria.	Reisch CR	Whitman WB	Nature	2011 May 12	10.1038/nature10078	133	2025/7/29		
23087033	Relationship between abundance and specific activity of bacterioplankton in open ocean surface waters.	Hunt DE	Johnson ZI	Applied and environmental microbiology	2013 Jan	10.1128/AEM.02155-12	131	2025/7/29		
28348231	Metabolic evolution and the self-organization of ecosystems.	Braakman R	Chisholm SW	Proceedings of the National Academy of Sciences of the United States of America	2017 Apr 11	10.1073/pnas.1619573114	130	2025/7/29		
17635551	Microbial control of phosphate in the nutrient-depleted North Atlantic subtropical gyre.	Zubkov MV	Burkill PH	Environmental microbiology	2007 Aug	10.1111/j.1462-2920.2007.01324.x	128	2025/7/29		
24781899	Discovery of a SAR11 growth requirement for thiamin's pyrimidine precursor and its distribution in the Sargasso Sea.	Carini P	Giovannoni SJ	The ISME journal	2014 Aug	10.1038/ismej.2014.61	128	2025/7/29		
20596072	Distribution of Roseobacter RCA and SAR11 lineages in the North Sea and characteristics of an abundant RCA isolate.	Giebel HA	Brinkhoff T	The ISME journal	2011 Jan	10.1038/ismej.2010.87	127	2025/7/29		
17553778	Diversity and genomics of Antarctic marine micro-organisms.	Murray AE	Grzymski JJ	"Philosophical transactions of the Royal Society of London. Series B, Biological sciences"	2007 Dec 29	10.1098/rstb.2006.1944	125	2025/7/29		
21390080	Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem.	Nelson CE	Carlson CA	The ISME journal	2011 Aug	10.1038/ismej.2011.12	124	2025/7/29		
22390635	Community analysis of high- and low-nucleic acid-containing bacteria in NW Mediterranean coastal waters using 16S rDNA pyrosequencing.	Vila-Costa M	Moran MA	Environmental microbiology	2012 Jun	10.1111/j.1462-2920.2012.02720.x	124	2025/7/29		
29599519	Cultivation and genomics of the first freshwater SAR11 (LD12) isolate.	Henson MW	Thrash JC	The ISME journal	2018 Jun	10.1038/s41396-018-0092-2	124	2025/7/29		
27199970	Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton.	Milici M	Wagner-Döbler I	Frontiers in microbiology	2016	10.3389/fmicb.2016.00649	123	2025/7/29		
19776155	A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria.	Poiata E	Breaker RR	"RNA (New York, N.Y.)"	2009 Nov	10.1261/rna.1824209	121	2025/7/29		
21515719	Differing growth responses of major phylogenetic groups of marine bacteria to natural phytoplankton blooms in the western North Pacific Ocean.	Tada Y	Hamasaki K	Applied and environmental microbiology	2011 Jun	10.1128/AEM.02952-10	120	2025/7/29		
20393571	Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing.	Ghai R	Rodriguez-Valera F	The ISME journal	2010 Sep	10.1038/ismej.2010.44	116	2025/7/29		
22133021	Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea.	Ngugi DK	Stingl U	Molecular ecology	2012 Jan	10.1111/j.1365-294X.2011.05378.x	116	2025/7/29		
17988398	Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data.	Wilhelm LJ	Giovannoni SJ	Biology direct	2007 Nov 7	10.1186/1745-6150-2-27	115	2025/7/29		
24349502	"New rRNA gene-based phylogenies of the Alphaproteobacteria provide perspective on major groups, mitochondrial ancestry and phylogenetic instability."	Ferla MP	Patrick WM	PloS one	2013	10.1371/journal.pone.0083383	115	2025/7/29		
27573103	The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.	Sun J	Giovannoni SJ	Nature microbiology	2016 May 16	10.1038/nmicrobiol.2016.65	114	2025/7/29		
21938022	Unveiling in situ interactions between marine protists and bacteria through single cell sequencing.	Martinez-Garcia M	Stepanauskas R	The ISME journal	2012 Mar	10.1038/ismej.2011.126	113	2025/7/29		
19889000	The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity.	Schwalbach MS	Giovannoni SJ	Environmental microbiology	2010 Feb	10.1111/j.1462-2920.2009.02092.x	112	2025/7/29		
21900598	Independent genome reduction and phylogenetic reclassification of the oceanic SAR11 clade.	Viklund J	Andersson SG	Molecular biology and evolution	2012 Feb	10.1093/molbev/msr203	112	2025/7/29		
29521439	Primer selection impacts specific population abundances but not community dynamics in a monthly time-series 16S rRNA gene amplicon analysis of coastal marine bacterioplankton.	Wear EK	Carlson CA	Environmental microbiology	2018 Aug	10.1111/1462-2920.14091	112	2025/7/29		
30531893	"Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation."	Reintjes G	Amann R	The ISME journal	2019 May	10.1038/s41396-018-0326-3	111	2025/7/29		
31332382	Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean.	Durham BP	Armbrust EV	Nature microbiology	2019 Oct	10.1038/s41564-019-0507-5	111	2025/7/29		
17310401	Living without Fur: the subtlety and complexity of iron-responsive gene regulation in the symbiotic bacterium Rhizobium and other alpha-proteobacteria.	Johnston AW	Rodionov DA	"Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine"	2007 Jun	10.1007/s10534-007-9085-8	109	2025/7/29		
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25333462	Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities.	Dupont CL	Allen AE	The ISME journal	2015 May	10.1038/ismej.2014.198	108	2025/7/29		
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21724878	Comparison of growth rates of aerobic anoxygenic phototrophic bacteria and other bacterioplankton groups in coastal Mediterranean waters.	Ferrera I	Koblízek M	Applied and environmental microbiology	2011 Nov	10.1128/AEM.00208-11	101	2025/7/29		
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22066565	Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone.	Fuchsman CA	Staley JT	FEMS microbiology ecology	2011 Dec	10.1111/j.1574-6941.2011.01189.x	99	2025/7/29		
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27092130	Diversity and Temporal Dynamics of the Epiphytic Bacterial Communities Associated with the Canopy-Forming Seaweed Cystoseira compressa (Esper) Gerloff and Nizamuddin.	Mancuso FP	De Clerck O	Frontiers in microbiology	2016	10.3389/fmicb.2016.00476	89	2025/7/29		
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26648916	Natural Sunlight Shapes Crude Oil-Degrading Bacterial Communities in Northern Gulf of Mexico Surface Waters.	Bacosa HP	Erdner DL	Frontiers in microbiology	2015	10.3389/fmicb.2015.01325	85	2025/7/29		
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18469119	"Proteomic analysis of stationary phase in the marine bacterium ""Candidatus Pelagibacter ubique""."	Sowell SM	Giovannoni SJ	Applied and environmental microbiology	2008 Jul	10.1128/AEM.00599-08	80	2025/7/29		
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18043613	Adaptation and spectral tuning in divergent marine proteorhodopsins from the eastern Mediterranean and the Sargasso Seas.	Sabehi G	Béjà O	The ISME journal	2007 May	10.1038/ismej.2007.10	79	2025/7/29		
17827310	High temporal but low spatial heterogeneity of bacterioplankton in the Chesapeake Bay.	Kan J	Chen F	Applied and environmental microbiology	2007 Nov	10.1128/AEM.00541-07	78	2025/7/29		
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27303734	Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico.	Henson MW	Thrash JC	mSphere	2016 Mar-Apr	10.1128/mSphere.00028-16	78	2025/7/29		
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30186275	Nano-Sized and Filterable Bacteria and Archaea: Biodiversity and Function.	Ghuneim LJ	Golyshina OV	Frontiers in microbiology	2018	10.3389/fmicb.2018.01971	60	2025/7/29		
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38374154	Particle-attached bacteria act as gatekeepers in the decomposition of complex phytoplankton polysaccharides.	Wang FQ	Amann RI	Microbiome	2024 Feb 20	10.1186/s40168-024-01757-5	27	2025/7/29		
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31417537	Viral Regulation on Bacterial Community Impacted by Lysis-Lysogeny Switch: A Microcosm Experiment in Eutrophic Coastal Waters.	Chen X	Zhang R	Frontiers in microbiology	2019	10.3389/fmicb.2019.01763	26	2025/7/29		
36274162	Plastic leachates impair picophytoplankton and dramatically reshape the marine microbiome.	Focardi A	Tetu SG	Microbiome	2022 Oct 24	10.1186/s40168-022-01369-x	26	2025/7/29		
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27458438	"Unanticipated Geochemical and Microbial Community Structure under Seasonal Ice Cover in a Dilute, Dimictic Arctic Lake."	Schütte UM	White JR	Frontiers in microbiology	2016	10.3389/fmicb.2016.01035	24	2025/7/29		
28959250	Composition of Total and Cell-Proliferating Bacterioplankton Community in Early Summer in the North Sea - Roseobacters Are the Most Active Component.	Bakenhus I	Simon M	Frontiers in microbiology	2017	10.3389/fmicb.2017.01771	24	2025/7/29		
30890605	A Parasitic Arsenic Cycle That Shuttles Energy from Phytoplankton to Heterotrophic Bacterioplankton.	Giovannoni SJ	Noell SE	mBio	2019 Mar 19	10.1128/mBio.00246-19	24	2025/7/29		
34767048	"Uniqueness and Dependence of Bacterial Communities on Microplastics: Comparison with Water, Sediment, and Soil."	Zhang W	Yang Y	Microbial ecology	2022 Nov	10.1007/s00248-021-01919-0	24	2025/7/29		
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23626587	Characteristics of microbial communities in crustal fluids in a deep-sea hydrothermal field of the suiyo seamount.	Kato S	Yamagishi A	Frontiers in microbiology	2013	10.3389/fmicb.2013.00085	23	2025/7/29		
25625554	The transcriptional regulation of the glyoxylate cycle in SAR11 in response to iron fertilization in the Southern Ocean.	Beier S	Obernosterer I	Environmental microbiology reports	2015 Jun	10.1111/1758-2229.12267	23	2025/7/29		
33717004	"Terrestrial Inputs Shape Coastal Bacterial and Archaeal Communities in a High Arctic Fjord (Isfjorden, Svalbard)."	Delpech LM	Poste AE	Frontiers in microbiology	2021	10.3389/fmicb.2021.614634	23	2025/7/29		
33894601	Seasonal succession of microbes in different size-fractions and their modular structures determined by both macro- and micro-environmental filtering in dynamic coastal waters.	Chun SJ	Oh HM	The Science of the total environment	2021 Aug 25	10.1016/j.scitotenv.2021.147046	23	2025/7/29		
34512586	Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics.	Haro-Moreno JM	Rodriguez-Valera F	Frontiers in microbiology	2021	10.3389/fmicb.2021.708782	23	2025/7/29		
34680243	[(99m)Tc]Tc-DB15 in GRPR-Targeted Tumor Imaging with SPECT: From Preclinical Evaluation to the First Clinical Outcomes.	Nock BA	Maina T	Cancers	2021 Oct 12	10.3390/cancers13205093	23	2025/7/29		
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24131478	Changes in bacterial metabolism as a response to dissolved organic matter modification during protozoan grazing in coastal Cantabrian and Mediterranean waters.	Baña Z	Iriberri J	Environmental microbiology	2014 Feb	10.1111/1462-2920.12274	21	2025/7/29		
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28401694	"Effects of grazing, phosphorus and light on the growth rates of major bacterioplankton taxa in the coastal NW Mediterranean."	Sánchez O	Ferrera I	Environmental microbiology reports	2017 Jun	10.1111/1758-2229.12535	21	2025/7/29		
29575679	Contrasting P acquisition strategies of the bacterial communities associated with legume and grass in subtropical orchard soil.	Zhou Y	Yao Q	Environmental microbiology reports	2018 Jun	10.1111/1758-2229.12641	21	2025/7/29		
32071164	Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments.	Zaragoza-Solas A	López-Pérez M	mSystems	2020 Feb 18	10.1128/mSystems.00905-19	21	2025/7/29		
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33606522	Responses of Coastal Marine Microbiomes Exposed to Anthropogenic Dissolved Organic Carbon.	Cerro-Gálvez E	Vila-Costa M	Environmental science & technology	2021 Jul 20	10.1021/acs.est.0c07262	21	2025/7/29		
25238400	Effects of ecological engineered oxygenation on the bacterial community structure in an anoxic fjord in western Sweden.	Forth M	Treusch AH	The ISME journal	2015 Mar	10.1038/ismej.2014.172	20	2025/7/29		
25873914	Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria.	Neuenschwander SM	Pernthaler J	Frontiers in microbiology	2015	10.3389/fmicb.2015.00247	20	2025/7/29		
29872114	Low activity of lytic pelagiphages in coastal marine waters.	Alonso-Sáez L	Clokie MR	The ISME journal	2018 Aug	10.1038/s41396-018-0185-y	20	2025/7/29		
32523584	Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System.	Reji L	Francis CA	Frontiers in microbiology	2020	10.3389/fmicb.2020.01075	20	2025/7/29		
33148818	Sediment Metagenomes as Time Capsules of Lake Microbiomes.	Garner RE	Walsh DA	mSphere	2020 Nov 4	10.1128/mSphere.00512-20	20	2025/7/29		
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30786927	Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya.	Kim SJ	Rhee SK	Microbiome	2019 Feb 20	10.1186/s40168-019-0643-4	19	2025/7/29		
31697694	"Prokaryotic and eukaryotic microbiomes associated with blooms of the ichthyotoxic dinoflagellate Cochlodinium (Margalefidinium) polykrikoides in New York, USA, estuaries."	Hattenrath-Lehmann TK	Gobler CJ	PloS one	2019	10.1371/journal.pone.0223067	19	2025/7/29		
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26150812	Zonation of bacterioplankton communities along aging upwelled water in the northern Benguela upwelling.	Bergen B	Jürgens K	Frontiers in microbiology	2015	10.3389/fmicb.2015.00621	18	2025/7/29		
27994576	Intraclade Heterogeneity in Nitrogen Utilization by Marine Prokaryotes Revealed Using Stable Isotope Probing Coupled with Tag Sequencing (Tag-SIP).	Morando M	Capone DG	Frontiers in microbiology	2016	10.3389/fmicb.2016.01932	18	2025/7/29		
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29991763	Bacterial community composition responds to changes in copepod abundance and alters ecosystem function in an Arctic mesocosm study.	Tsagaraki TM	Thingstad TF	The ISME journal	2018 Nov	10.1038/s41396-018-0217-7	18	2025/7/29		
32715608	Microbial tropicalization driven by a strengthening western ocean boundary current.	Messer LF	Brown MV	Global change biology	2020 Oct	10.1111/gcb.15257	18	2025/7/29		
33071990	Diversity of Pelagic and Benthic Bacterial Assemblages in the Western Pacific Ocean.	Wang M	Li W	Frontiers in microbiology	2020	10.3389/fmicb.2020.01730	18	2025/7/29		
35350629	"Linkages Among Dissolved Organic Matter Export, Dissolved Metabolites, and Associated Microbial Community Structure Response in the Northwestern Sargasso Sea on a Seasonal Scale."	Liu S	Carlson CA	Frontiers in microbiology	2022	10.3389/fmicb.2022.833252	18	2025/7/29		
18369329	Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems.	Atamna-Ismaeel N	Beja O	The ISME journal	2008 Jun	10.1038/ismej.2008.27	17	2025/7/29		
23750155	Contrasting activity patterns determined by BrdU incorporation in bacterial ribotypes from the Arctic Ocean in winter.	Galand PE	Casamayor EO	Frontiers in microbiology	2013	10.3389/fmicb.2013.00118	17	2025/7/29		
28645159	"Genomic characterization of two novel SAR11 isolates from the Red Sea, including the first strain of the SAR11 Ib clade."	Jimenez-Infante F	Stingl U	FEMS microbiology ecology	2017 Jul 1	10.1093/femsec/fix083	17	2025/7/29		
28989970	Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon.	Silva BSO	Thompson FL	mSphere	2017 Sep-Oct	10.1128/mSphere.00366-17	17	2025/7/29		
29572211	Homologous Recombination in Core Genomes Facilitates Marine Bacterial Adaptation.	Sun Y	Luo H	Applied and environmental microbiology	2018 Jun 1	10.1128/AEM.02545-17	17	2025/7/29		
29593685	The Use of a Chimeric Rhodopsin Vector for the Detection of New Proteorhodopsins Based on Color.	Pushkarev A	Béjà O	Frontiers in microbiology	2018	10.3389/fmicb.2018.00439	17	2025/7/29		
34581594	Lineage-Specific Growth Curves Document Large Differences in Response of Individual Groups of Marine Bacteria to the Top-Down and Bottom-Up Controls.	Fecskeová LK	Koblížek M	mSystems	2021 Oct 26	10.1128/mSystems.00934-21	17	2025/7/29		
35579458	"Insights into Prokaryotic Community and Its Potential Functions in Nitrogen Metabolism in the Bay of Bengal, a Pronounced Oxygen Minimum Zone."	Gu B	Xia X	Microbiology spectrum	2022 Jun 29	10.1128/spectrum.00892-21	17	2025/7/29		
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30370186	Proteorhodopsins dominate the expression of phototrophic mechanisms in seasonal and dynamic marine picoplankton communities.	Sieradzki ET	Gómez-Consarnau L	PeerJ	2018	10.7717/peerj.5798	16	2025/7/29		
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36406446	Microbial community structures and important taxa across oxygen gradients in the Andaman Sea and eastern Bay of Bengal epipelagic waters.	Guo R	Wang P	Frontiers in microbiology	2022	10.3389/fmicb.2022.1041521	16	2025/7/29		
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30011002	Daily variation in the prokaryotic community during a spring bloom in shelf waters of the East China Sea.	Choi DH	Noh JH	FEMS microbiology ecology	2018 Sep 1	10.1093/femsec/fiy134	15	2025/7/29		
32849378	Seasonal Niche Partitioning of Surface Temperate Open Ocean Prokaryotic Communities.	Mena C	Sintes E	Frontiers in microbiology	2020	10.3389/fmicb.2020.01749	15	2025/7/29		
33150499	In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay.	Rasmussen AN	Francis CA	Microbial ecology	2021 Apr	10.1007/s00248-020-01621-7	15	2025/7/29		
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36448813	Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes.	Patin NV	Goodwin KD	mSystems	2022 Dec 20	10.1128/msystems.00595-22	15	2025/7/29		
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36273241	Basin-scale biogeography of Prochlorococcus and SAR11 ecotype replication	Larkin AA	Martiny AC	The ISME journal	2022 Oct 22	10.1038/s41396-022-01332-6	14	2025/7/29		
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30647156	Trophic Specialization Results in Genomic Reduction in Free-Living Marine Idiomarina Bacteria.	Qin QL	Zhang YZ	mBio	2019 Jan 15	10.1128/mBio.02545-18	14	2025/7/29		
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33248757	Influence of the cold bottom water on taxonomic and functional composition and complexity of microbial communities in the southern Yellow Sea during the summer.	Wang Y	Wang C	The Science of the total environment	2021 Mar 10	10.1016/j.scitotenv.2020.143496	14	2025/7/29		
33810062	The Composition and Primary Metabolic Potential of Microbial Communities Inhabiting the Surface Water in the Equatorial Eastern Indian Ocean.	Ding C	Sun J	Biology	2021 Mar 22	10.3390/biology10030248	14	2025/7/29		
34495690	Microbial Plankton Community Structure and Function Responses to Vitamin B(12) and B(1) Amendments in an Upwelling System.	Joglar V	Teira E	Applied and environmental microbiology	2021 Oct 28	10.1128/AEM.01525-21	14	2025/7/29		
36541038	Exploring the phycosphere of Emiliania huxleyi: From bloom dynamics to microbiome assembly experiments.	Câmara Dos Reis M	Jeanthon C	Molecular ecology	2023 Dec	10.1111/mec.16829	14	2025/7/29		
37425997	"Polymeric carbohydrates utilization separates microbiomes into niches: insights into the diversity of microbial carbohydrate-active enzymes in the inner shelf of the Pearl River Estuary, China."	Sun CC	Wang YS	Frontiers in microbiology	2023	10.3389/fmicb.2023.1180321	14	2025/7/29		
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27733846	Abundance of Two Pelagibacter ubique Bacteriophage Genotypes along a Latitudinal Transect in the North and South Atlantic Oceans.	Eggleston EM	Hewson I	Frontiers in microbiology	2016	10.3389/fmicb.2016.01534	13	2025/7/29		
29802183	Manganese Is Essential for PlcP Metallophosphoesterase Activity Involved in Lipid Remodeling in Abundant Marine Heterotrophic Bacteria.	Wei T	Chen Y	Applied and environmental microbiology	2018 Aug 1	10.1128/AEM.01109-18	13	2025/7/29		
31028022	Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes.	Thompson LR	Stingl U	Applied and environmental microbiology	2019 Jul 1	10.1128/AEM.00369-19	13	2025/7/29		
31915903	"Rapid environmental change shapes pond water microbial community structure and function, affecting mud crab (Scylla paramamosain) survivability."	Deng Y	Guo Z	Applied microbiology and biotechnology	2020 Mar	10.1007/s00253-019-10328-w	13	2025/7/29		
32561583	Expanding the Diversity of Bacterioplankton Isolates and Modeling Isolation Efficacy with Large-Scale Dilution-to-Extinction Cultivation.	Henson MW	Thrash JC	Applied and environmental microbiology	2020 Aug 18	10.1128/AEM.00943-20	13	2025/7/29		
33335519	Prokaryotic Diversity and Distribution Along Physical and Nutrient Gradients in the Tunisian Coastal Waters (South Mediterranean Sea).	Quéméneur M	Bellaaj-Zouari A	Frontiers in microbiology	2020	10.3389/fmicb.2020.593540	13	2025/7/29		
34425701	SAR11 Cells Rely on Enzyme Multifunctionality To Metabolize a Range of Polyamine Compounds.	Noell SE	Giovannoni SJ	mBio	2021 Aug 31	10.1128/mBio.01091-21	13	2025/7/29		
35154048	Bacterioplankton Diversity and Distribution in Relation to Phytoplankton Community Structure in the Ross Sea Surface Waters.	Cordone A	Mangoni O	Frontiers in microbiology	2022	10.3389/fmicb.2022.722900	13	2025/7/29		
35972150	Genomes from Uncultivated Pelagiphages Reveal Multiple Phylogenetic Clades Exhibiting Extensive Auxiliary Metabolic Genes and Cross-Family Multigene Transfers.	Wittmers F	Worden AZ	mSystems	2022 Oct 26	10.1128/msystems.01522-21	13	2025/7/29		
36167684	Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics.	Seong HJ	Sul WJ	Microbiome	2022 Sep 28	10.1186/s40168-022-01340-w	13	2025/7/29		
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38030907	DMSOP-cleaving enzymes are diverse and widely distributed in marine microorganisms.	Carrión O	Zhang YZ	Nature microbiology	2023 Dec	10.1038/s41564-023-01526-4	13	2025/7/29		
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35464964	Spatiotemporal Variation of Microbial Communities in the Ultra-Oligotrophic Eastern Mediterranean Sea.	Haber M	Steindler L	Frontiers in microbiology	2022	10.3389/fmicb.2022.867694	12	2025/7/29		
36707613	Ubiquitous occurrence of a dimethylsulfoniopropionate ABC transporter in abundant marine bacteria.	Li CY	Zhang YZ	The ISME journal	2023 Apr	10.1038/s41396-023-01375-3	12	2025/7/29		
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29476140	Proteorhodopsin variability and distribution in the North Pacific Subtropical Gyre.	Olson DK	DeLong EF	The ISME journal	2018 Apr	10.1038/s41396-018-0074-4	3	2025/7/29		
34406852	Proteorhodopsin Phototrophy in Antarctic Coastal Waters.	Cifuentes-Anticevic J	Díez B	mSphere	2021 Aug 25	10.1128/mSphere.00525-21	3	2025/7/29		
34946222	Diel Protein Regulation of Marine Picoplanktonic Communities Assessed by Metaproteomics.	Géron A	Matallana-Surget S	Microorganisms	2021 Dec 18	10.3390/microorganisms9122621	3	2025/7/29		
35136122	Dynamics of actively dividing prokaryotes in the western Mediterranean Sea.	Mena C	Sintes E	Scientific reports	2022 Feb 8	10.1038/s41598-022-06120-y	3	2025/7/29		
35295296	Characterization of the Trimethylamine N-Oxide Transporter From Pelagibacter Strain HTCC1062 Reveals Its Oligotrophic Niche Adaption.	Gao C	Li CY	Frontiers in microbiology	2022	10.3389/fmicb.2022.838608	3	2025/7/29		
36160263	Impact of preservation method and storage period on ribosomal metabarcoding of marine microbes: Implications for remote automated samplings.	Wietz M	Boetius A	Frontiers in microbiology	2022	10.3389/fmicb.2022.999925	3	2025/7/29		
37509170	Preclinical Characterization of a Stabilized Gastrin-Releasing Peptide Receptor Antagonist for Targeted Cancer Theranostics.	Abouzayed A	Orlova A	Biomolecules	2023 Jul 14	10.3390/biom13071134	3	2025/7/29		
38362323	Solid-state NMR for the characterization of retinal chromophore and Schiff base in TAT rhodopsin embedded in membranes under weakly acidic conditions.	Arikawa S	Kawamura I	Biophysics and physicobiology	2023 Mar 21	10.2142/biophysico.bppb-v20.s017	3	2025/7/29		
38505693	Ubiquitous filter feeders shape open ocean microbial community structure and function.	Thompson AW	Sutherland KR	PNAS nexus	2024 Mar	10.1093/pnasnexus/pgae091	3	2025/7/29		
39969192	Large diversity in the O-chain biosynthetic cluster within populations of Pelagibacterales.	Haro-Moreno JM	Rodriguez-Valera F	mBio	2025 Mar 12	10.1128/mbio.03455-24	3	2025/7/29		
37789093	"Ubiquitous, B(12)-dependent virioplankton utilizing ribonucleotide-triphosphate reductase demonstrate interseasonal dynamics and associate with a diverse range of bacterial hosts in the pelagic ocean."	Wu LY	Wommack KE	ISME communications	2023 Oct 3	10.1038/s43705-023-00306-9	2	2025/7/29		
24684969	Single cell genomics of deep ocean bacteria.	Zhao W	Andersson SG	Trends in microbiology	2014 May	10.1016/j.tim.2014.03.002	2	2025/7/29		
28274730	"Corrigendum to ""Are ocean currents to slow to counteract SAR11 evolution? A next-generation sequencing, phylogeographic analysis"" [Mol. Phylogenet. Evol. 107 (2017) 324-337]."	Manrique JM	Jones LR	Molecular phylogenetics and evolution	2017 May	10.1016/j.ympev.2017.03.001	2	2025/7/29		
35250917	Metaexoproteomics Reveals Microbial Behavior in the Ocean's Interior.	Xie ZX	Wang DZ	Frontiers in microbiology	2022	10.3389/fmicb.2022.749874	2	2025/7/29		
35715385	Rapid changes in coastal ocean microbiomes uncoupled with shifts in environmental variables.	Gronniger JL	Hunt DE	Environmental microbiology	2022 Sep	10.1111/1462-2920.16086	2	2025/7/29		
37222519	"Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes."	Haro-Moreno JM	Rodriguez-Valera F	mSystems	2023 Jun 29	10.1128/msystems.00008-23	2	2025/7/29		
37708616	Development and validation of a real-time PCR assay protocol for the specific detection and quantification of pelagiphages in seawater samples.	Mendoza-Cano F	Sánchez-Paz A	Marine environmental research	2023 Oct	10.1016/j.marenvres.2023.106168	2	2025/7/29		
37887020	Biogeographic Analysis Suggests Two Types of Planktonic Prokaryote Communities in the Barents Sea.	Namsaraev Z	Toshchakov S	Biology	2023 Oct 5	10.3390/biology12101310	2	2025/7/29		
38319114	In situ community transcriptomics illuminates CO(2)-fixation potentials and supporting roles of phagotrophy and proton pump in plankton in a subtropical marginal sea.	Li H	Lin S	Microbiology spectrum	2024 Mar 5	10.1128/spectrum.02177-23	2	2025/7/29		
38926906	Novel phage infecting the Roseobacter CHUG lineage reveals a diverse and globally distributed phage family.	Wu Z	Zhao Y	mSphere	2024 Jul 30	10.1128/msphere.00458-24	2	2025/7/29		
39119822	Differential association of key bacterial groups with diatoms and Phaeocystis spp. during spring blooms in the Southern Ocean.	West NJ	Obernosterer I	MicrobiologyOpen	2024 Aug	10.1002/mbo3.1428	2	2025/7/29		
39367564	Whole cell affinity for 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in the marine bacterium Candidatus Pelagibacter st. HTCC7211 explains marine dissolved HMP concentrations.	Brennan E	Suffridge CP	Environmental microbiology reports	2024 Oct	10.1111/1758-2229.70023	2	2025/7/29		
39458495	Comparison of the Gut Microbiota of Patients Who Improve with Antibiotic Combination Therapy for Ulcerative Colitis and Those Who Do Not: Investigation by Fecal Metagenomic Analyses.	Ohkusa T	Kuroda M	Nutrients	2024 Oct 16	10.3390/nu16203500	2	2025/7/29		
39462132	Metagenomic analysis of deep-sea bacterial communities in the Makassar and Lombok Straits.	Siallagan ZL	Dwivany FM	Scientific reports	2024 Oct 26	10.1038/s41598-024-74118-9	2	2025/7/29		
40032822	Distinct horizontal gene transfer potential of extracellular vesicles versus viral-like particles in marine habitats.	Biller SJ	DeLong EF	Nature communications	2025 Mar 3	10.1038/s41467-025-57276-w	2	2025/7/29		
24286338	Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade.	Zaremba-Niedzwiedzka K	Andersson SG	Genome biology	2013 Nov 28	10.1186/gb-2013-14-11-r130	1	2025/7/29		
31542845	H-Aquil: a chemically defined cell culture medium for trace metal studies in Vibrios and other marine heterotrophic bacteria.	Martocello DE 3rd	McRose DL	"Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine"	2019 Dec	10.1007/s10534-019-00215-2	1	2025/7/29		
31836839	Correction: Cultivation and genomics of the first freshwater SAR11 (LD12) isolate.	Henson MW	Thrash JC	The ISME journal	2020 Mar	10.1038/s41396-019-0569-7	1	2025/7/29		
32590932	Diverse and unique viruses discovered in the surface water of the East China Sea.	Wu S	Wang Y	BMC genomics	2020 Jun 26	10.1186/s12864-020-06861-y	1	2025/7/29		
34618272	"A novel thermophilic ��-carotene 15,15'-monooxygenase with broad substrate specificity from the marine bacterium Candidatus Pelagibacter sp. HTCC7211."	Long Z	Wei T	Biotechnology letters	2021 Dec	10.1007/s10529-021-03188-w	1	2025/7/29		
35857930	Exaggerated trans-membrane charge of ammonium transporters in nutrient-poor marine environments.	Kellom M	Santoro AE	Open biology	2022 Jul	10.1098/rsob.220041	1	2025/7/29		
38057653	Salinity-controlled distribution of prokaryotic communities in the Arctic sea-ice melt ponds.	Vipindas PV	Krishnan KP	World journal of microbiology & biotechnology	2023 Dec 7	10.1007/s11274-023-03850-7	1	2025/7/29		
38593647	Influence of the community assemblage on sulfur distributions in the South China sea.	Zhang HQ	Zhang Q	Marine environmental research	2024 May	10.1016/j.marenvres.2024.106481	1	2025/7/29		
38680331	Two Novel [(68)Ga]Ga-Labeled Radiotracers Based on Metabolically Stable [Sar(11)]RM26 Antagonistic Peptide for Diagnostic Positron Emission Tomography Imaging of GRPR-Positive Prostate Cancer.	Kanellopoulos P	Orlova A	ACS omega	2024 Apr 23	10.1021/acsomega.4c01348	1	2025/7/29		
38980056	Microbial ecology of northern Gulf of Mexico estuarine waters.	Henson MW	Thrash JC	mSystems	2024 Aug 20	10.1128/msystems.01318-23	1	2025/7/29		
39158294	Nature should be the model for microbial sciences.	Baker BJ	Leão P	Journal of bacteriology	2024 Sep 19	10.1128/jb.00228-24	1	2025/7/29		
39184082	Climate-driven succession in marine microbiome biodiversity and biogeochemical function.	Larkin AA	Martiny A	Research square	2024 Aug 16	10.21203/rs.3.rs-4682733/v1	1	2025/7/29		
39338496	"Coral Reef Water Microbial Communities of Jardines de la Reina, Cuba."	Denux M	Apprill A	Microorganisms	2024 Sep 3	10.3390/microorganisms12091822	1	2025/7/29		
39599783	Time Series Data Provide Insights into the Evolution and Abundance of One of the Most Abundant Viruses in the Marine Virosphere: The Uncultured Pelagiphages vSAG 37-F6.	Vila-Nistal M	Martinez-Garcia M	Viruses	2024 Oct 24	10.3390/v16111669	1	2025/7/29		
39905490	Extensive paralogism in the environmental pangenome: a key factor in the ecological success of natural SAR11 populations.	Molina-Pardines C	López-Pérez M	Microbiome	2025 Feb 4	10.1186/s40168-025-02037-6	1	2025/7/29		
40034844	Size fractionation informs microbial community composition and interactions in the eastern tropical North Pacific Ocean.	Thompson MA	Peng X	FEMS microbes	2024	10.1093/femsmc/xtae028	1	2025/7/29		
40280934	Climate-driven succession in marine microbiome biodiversity and biogeochemical function.	Larkin AA	Martiny AC	Nature communications	2025 Apr 25	10.1038/s41467-025-59382-1	1	2025/7/29		
40485829	"Quantitative microbial taxonomy across particle size, depth, and oxygen concentration."	Huanca-Valenzuela P	Cram JA	Frontiers in microbiology	2025	10.3389/fmicb.2025.1552305	1	2025/7/29		
40057569	Insights into putative alginate lyases from epipelagic and mesopelagic communities of the global ocean	Lozada M	Dionisi HM	Scientific reports	2025 Mar 8	10.1038/s41598-025-92960-3	0	2025/7/29		
11480423	Syntheses and effect of bombesin-fragment6-14 and its four analogues on food intake in rats.	Abiko T	Kimura Y	Current pharmaceutical biotechnology	2001 Jun	10.2174/1389201013378752	0	2025/7/29		
21887519	High contribution of SAR11 to microbial activity in the north west Mediterranean Sea.	Laghdass M	Obernosterer I	Microbial ecology	2012 Feb	10.1007/s00248-011-9915-7	0	2025/7/29		
26573832	Expansion of Cultured Bacterial Diversity by Large-Scale Dilution-to-Extinction Culturing from a Single Seawater Sample.	Yang SJ	Cho JC	Microbial ecology	2016 Jan	10.1007/s00248-015-0695-3	0	2025/7/29		
26944731	Dynamics of size-fractionated bacterial communities during the coastal dispersal of treated municipal effluents.	Liu S	Huang L	Applied microbiology and biotechnology	2016 Jul	10.1007/s00253-016-7408-9	0	2025/7/29		
29057995	Author Correction: Surface properties of SAR11 bacteria facilitate grazing avoidance.	Dadon-Pilosof A	Yahel G	Nature microbiology	2017 Dec	10.1038/s41564-017-0064-8	0	2025/7/29		
34482372	Proteomic traits vary across taxa in a coastal Antarctic phytoplankton bloom.	McCain JSP	Bertrand EM	The ISME journal	2022 Feb	10.1038/s41396-021-01084-9	0	2025/7/29		
34654476	Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans.	Teng ZJ	Li CY	Microbiome	2021 Oct 16	10.1186/s40168-021-01153-3	0	2025/7/29		
34838139	Estuarine gradients dictate spatiotemporal variations of microbiome networks in the Chesapeake Bay.	Wang H	Kan J	Environmental microbiome	2021 Nov 27	10.1186/s40793-021-00392-z	0	2025/7/29		
35883169	Oceanospirillales containing the DMSP lyase DddD are key utilisers of carbon from DMSP in coastal seawater.	Liu J	Todd JD	Microbiome	2022 Jul 27	10.1186/s40168-022-01304-0	0	2025/7/29		
36825884	The mystery of the ice cold rose-Microbiome of an Arctic winter frost flower.	Thiele S	Øvreås L	MicrobiologyOpen	2023 Feb	10.1002/mbo3.1345	0	2025/7/29		
37186365	"Correction to ""SAR11 clade microdiversity and activity during the early spring blooms off Kerguelen Island, Southern Ocean""."	N/A	N/A	Environmental microbiology reports	2023 Apr 25	10.1111/1758-2229.13151	0	2025/7/29		
38117073	"Erratum for Br_wer et al., ""In situ cell division and mortality rates of SAR11, SAR86, Bacteroidetes, and Aurantivirga during phytoplankton blooms reveal differences in population controls""."	Brüwer JD	Fuchs BM	mSystems	2024 Jan 23	10.1128/msystems.01196-23	0	2025/7/29		
38948819	Targeted metagenomics reveals pangenomic diversity of the nitroplast (UCYN-A) and its algal host plastid.	Kantor EJH	LaRoche J	bioRxiv : the preprint server for biology	2024 Jun 19	10.1101/2024.06.19.599377	0	2025/7/29		
39096506	Niche differentiation within bacterial key-taxa in stratified surface waters of the Southern Pacific Gyre.	Oggerin M	Fuchs BM	The ISME journal	2024 Jan 8	10.1093/ismejo/wrae155	0	2025/7/29		
39457069	Linker-Mediated Inactivation of the SAM-II Domain in the Tandem SAM-II/SAM-V Riboswitch.	Feng S	Lu C	International journal of molecular sciences	2024 Oct 20	10.3390/ijms252011288	0	2025/7/29		
39476634	Seasonal dynamics of bacterial communities in a highly polluted coastal lagoon: Dominance of sulfur bacteria in response to elevated H(2)S levels.	Ozbayram EG	Albay M	Marine pollution bulletin	2024 Dec	10.1016/j.marpolbul.2024.117186	0	2025/7/29		
39809517	Effect of Light Regime on Candidatus Puniceispirillum marinum IMCC1322 in Nutrient-Replete Conditions.	Oh HM	Kwon KK	Journal of microbiology and biotechnology	2024 Nov 27	10.4014/jmb.2410.10034	0	2025/7/29		
39843462	Microbial carbon oxidation in seawater below the hypoxic threshold.	Wolf S	Giovannoni SJ	Scientific reports	2025 Jan 22	10.1038/s41598-024-82438-z	0	2025/7/29		
39923087	Spatial and temporal variation of Antarctic microbial interactions: a study around the west Antarctic Peninsula.	Sow SLS	Engelmann JC	Environmental microbiome	2025 Feb 8	10.1186/s40793-025-00663-z	0	2025/7/29		
40247698	Promiscuous and genome-wide recombination underlies the sequence-discrete species of the SAR11 lineage in the deep ocean.	Zhao J	Konstantinidis KT	The ISME journal	2025 Apr 18	10.1093/ismejo/wraf072	0	2025/7/29		
40271382	"Tagus River microbial profile through nanopore sequencing on samples gathered from Prainha do Braco de Prata, Lisbon."	Pedroso-Roussado C	Nunes N	Open research Europe	2024	10.12688/openreseurope.18072.3	0	2025/7/29		
40305681	Polyhydroxybutyrate production by freshwater SAR11 (LD12).	Bennett BD	Thrash JC	The ISME journal	2025 Jan 2	10.1093/ismejo/wraf087	0	2025/7/29		
40352106	Variational inference for microbiome survey data with application to global ocean data.	Mishra A	Müller CL	ISME communications	2025 Jan	10.1093/ismeco/ycaf062	0	2025/7/29		
40444437	Underlying mechanisms of spatial distribution of prokaryotic community in surface seawater from Arctic Ocean to the Sea of Japan.	Pan Y	Chen H	Microbiology spectrum	2025 Jul	10.1128/spectrum.00517-25	0	2025/7/29		
40716970	On the biological meaning of the population pangenome.	Rodriguez-Valera F	Molina-Pardines C	Trends in microbiology	2025 Jul 26	10.1016/j.tim.2025.07.004	0	2025/7/29		
